Changelog

Source: NEWS.md

semptools 0.3.1

CRAN release: 2024-11-09

Improvement

• Updated mark_sig() and mark_se() to preliminarily support plots with intercepts. (0.3.0.1)

• Updated add_sig() to support plots with intercepts. (0.3.0.2)

Bug Fixes

• The functions mark_sig() and mark_se() now work for models with ordinal variables. (0.3.0.1)

semptools 0.3.0

CRAN release: 2024-10-21

New Features

• Added set_edge_attribute() to change any attribute of the edges. (0.2.10.2)

• Added set_node_attribute() to change any attribute of the nodes. (0.2.10.3)

• Added set_edge_color() to change the colors of edges. (0.2.10.2)

• Added rescale_layout() to expand the plot to fit the rectangle bounded by -1 and 1 vertically and horizontally. (0.2.11.1)

• Added add_rsq() to add R-squares to endogenous variables. They will replace the residual variances in the plot. (0.2.11.4)

Improvement

• Updated mark_sig() to accept a data frame with the p-values. Users can supply p-values computed by other functions. (0.2.11.3)

• Updated mark_se() to accept a data frame with the standard errors. Users can supply standard errors computed by other functions. (0.2.11.3)

• Updated mark_sig() to use the p-values from lavaan::standardizedSolution(). Users need to explicitly request standardized solution p-values by setting the argument std_type. (0.2.11.3)

• Updated mark_se() to use the standard errors from lavaan::standardizedSolution(). Users need to explicitly request standardized solution standard errors by setting the argument std_type. (0.2.11.3)

• Functions that change the attributes of an edge, such as set_edge_label_position(), should now supports factor loadings by using the =~ operator when specifying the edge. Previously, we needed to specify a loading as if it were a regression path (e.g., x1 ~ f1). (0.2.11.5)

Miscellaneous

• Revised change_node_label() to address an issue with plot.qgraph(). label.cex should now be used as expected. (0.2.10.1)

• Fixed an R CMD check issue with some links in Rd files. (0.2.10.4)

• Start to use Use 0.X.0 for each initial submission to CRAN. (0.3.0)

semptools 0.2.10

CRAN release: 2023-10-15

New Features

• Added auto_factor_point_to() for creating the factor_point_to matrix. Revised set_sem_layout() to allow users to use a named vector for the factor_point_to argument. (0.2.9.15)
• Added auto_indicator_order() and lavaan_indicator_order() for setting indicator order in set_sem_layout() and set_cfa_layout(). Can handle nodes with labels changed. (0.2.9.18, 0.2.9.24)
• Revised set_cfa_layout() and set_sem_layout() to set indicator_order and indicator_factor automatically if not supplied. Node labels must be string for this option to work. (0.2.9.18, 0.2.9.23)
• Added an pkgdown articles on setting the layout for a model with both latent factors and exogenous observed variables. (0.2.9.25)

Bug Fixes

• Fixed set_cfa_layout() to work for LISREL-style graphs. (0.2.9.13)
• Fixed set_cfa_layout() to work for a model without factor covariances (e.g., exoCov = FALSE when calling semPlot::semPaths()). (0.2.9.14)
• Fixed a bug in auto_factor_point_to(): Cells with no direction specified is now set to NA. (0.2.9.21)

Miscellaneous

• Added an R CMD check for noSuggests. (0.2.9.12)
• Fixed a bug in the setting for pkgdown. (0.2.9.16)
• Add DoNotPlot = TRUE in all tests to prevent semPlot::semPaths() from plotting the graphs in the tests. (0.2.9.17, 0.2.9.20)
• Added the helper add_object(). (0.2.9.18)
• Removed dplyr functions from the code and removed dplyr from Imports. (0.2.9.19)
• Removed the check for factors with no direction specified in auto_factor_point_to(). The “factor” may be a manifest variable without indicators. (0.2.9.20)
• Added two internal helpers to check node labels (labels changed? labels non-string?). (0.2.9.22)
• Removed the mention of change_node_label2, which was not exported, from the help page. (0.2.9.26, 0.2.9.27)
• Made the warning and error messages of set_cfa_layout() and set_sem_layout() more informative. (0.2.9.28)

semptools 0.2.9.11

CRAN release: 2023-05-31

• Used the native functions of semPlot (semPlot::man() and semPlot::lat()) to check nodes in drop_nodes() and keep_nodes(). As a consequence, the semPlot package is now in the Import section. (More native functions will be used in the future to ensure compatibility.) (0.2.9.11)

semptools 0.2.9.10

• Updated pkgdown site.

semptools 0.2.9.9

• Added support for 2nd order factor (see vignette("second_order")). (0.2.9.7)
• Fixed doc due to Roxygen updated to 7.2.1. (0.2.9.7)
• Update the GitHub actions. (0.2.9.8)
• Fixed doc due to Roxygen updated to 7.2.3. (0.2.9.9)
• Fixed set_curve(). It should now work for bidirectional edges regardless of the order of the nodes in the specification. (0.2.9.9)

semptools 0.2.9.6

CRAN release: 2022-08-25

• Fixed several problems with pkgdown setting.

• Roxygen updated to 7.2.0 and some man pages are updated accordingly.

semptools 0.2.9.5

• Updated set_sem_layout() to support observed exogenous variables.

semptools 0.2.9.4

• Updated drop_nodes(): It now works with output without a covariance matrix (e.g, a model generated from lavaan::lavaanify() without data).

semptools 0.2.9.3

CRAN release: 2021-10-11

• Minor fixes to errors in CRAN checks.

semptools 0.2.9.2

CRAN release: 2021-09-27

• Minor fixes to the DESCRIPTION file and examples.

semptools 0.2.9.1

Bug Fix

• Fixed a bug in set_sem_layout(). Failed to work with models in which all factors have the same number of indicators.

Misc

• Reformatted the help sections of the functions (wrap the text for readability). This has no impact on uses and the generated help files.

semptools 0.2.9

• Added drop_nodes() and keep_nodes(). They process a semPlotModel object, which is generated by semPlot::semPlotModel(), drop or keep selected nodes (e.g., observed variables, latent factors) from the object. The result can then be passed to semPlot::semPaths() to draw a diagram without the dropped nodes.

• Add layout_matrix. A helper function for creating a layout matrix to be used by semPlot::semPaths(). Users specify the positions of nodes and the function will create the matrix accordingly.

• mark_sig(), mark_se(), and set_cfa_layout() will raise an error if the semPlot::semPaths object has intercepts terms. These function do not support plots with intercept terms yet.

• Updated change_node_label() to support named vectors.

• Added vignette("layout_matrix") to explain how layout matrix is used in semPlot::semPaths(), and how layout_matrix() can be used to construct the layout matrix.

• Updated the vignettes to use named vectors instead of “list of named lists” in some functions.

• Updated vignette("semptools") to introduce change_node_label().

• magrittr is no longer required for installing the package.

semptools 0.2.8.1

• Added change_node_label() for changing the labels of nodes. Several other functions were modified to adapt for this function.

• Added to_list_of_lists() for converting a named vector to a list of lists. Specifying a list of lists is necessary in some cases because the a label may not be string (e.g., it may be an expression). However, in most cases, all elements are strings or numbers and so a named vector will do. This function is to be used internally by other functions, not to be used by users.

semptools 0.2.8

• Fix a bug in set_cfa_layout(). It now will not raise an error for one-factor models.

• Fix some typo errors in documentation pages.

semptools 0.2.7

• Import the pipe operator from magrittr so users no need to load the package themselves.

semptools 0.2.6

• Update the documentation of mark_sig() and mark_se() to emphasize that currently they require a lavaan output.

semptools 0.2.5

• Used pkgdown to build a site. The first draft, with minimal customization.

semptools 0.2.4

• Alpha release. Ready for testing.