# Bootstrap Estimates for 'indirect_effects' and 'cond_indirect_effects'

Source:`R/do_boot.R`

`do_boot.Rd`

Generate bootstrap
estimates to be used by
`cond_indirect_effects()`

,
`indirect_effect()`

, and
`cond_indirect()`

,

## Usage

```
do_boot(
fit,
R = 100,
seed = NULL,
parallel = TRUE,
ncores = max(parallel::detectCores(logical = FALSE) - 1, 1),
make_cluster_args = list(),
progress = TRUE
)
```

## Arguments

- fit
Either (a) a list of

`lm`

class objects, or the output of`lm2list()`

(i.e., an`lm_list`

-class object), or (b) the output of`lavaan::sem()`

.- R
The number of bootstrap samples. Default is 100.

- seed
The seed for the bootstrapping. Default is

`NULL`

and seed is not set.- parallel
Logical. Whether parallel processing will be used. Default is

`TRUE`

.- ncores
Integer. The number of CPU cores to use when

`parallel`

is`TRUE`

. Default is the number of non-logical cores minus one (one minimum). Will raise an error if greater than the number of cores detected by`parallel::detectCores()`

. If`ncores`

is set, it will override`make_cluster_args`

.- make_cluster_args
A named list of additional arguments to be passed to

`parallel::makeCluster()`

. For advanced users. See`parallel::makeCluster()`

for details. Default is`list()`

, no additional arguments.- progress
Logical. Display progress or not. Default is

`TRUE`

.

## Value

A `boot_out`

-class object
that can be used for the `boot_out`

argument of
`cond_indirect_effects()`

,
`indirect_effect()`

, and
`cond_indirect()`

for forming
bootstrap confidence intervals. The
object is a list with the number of
elements equal to the number of
bootstrap samples. Each element is a
list of the parameter estimates and
sample variances and covariances of
the variables in each bootstrap
sample.

## Details

It does nonparametric
bootstrapping to generate bootstrap
estimates of the parameter estimates
in a model fitted either by
`lavaan::sem()`

or by a sequence of
calls to `lm()`

. The stored estimates
can then be used by
`cond_indirect_effects()`

,
`indirect_effect()`

, and
`cond_indirect()`

to form
bootstrapping confidence intervals.

This approach removes the need to
repeat bootstrapping in each call to
`cond_indirect_effects()`

,
`indirect_effect()`

, and
`cond_indirect()`

. It also ensures
that the same set of bootstrap
samples is used in all subsequent
analysis.

It determines the type of the fit
object automatically and then calls
`lm2boot_out()`

, `fit2boot_out()`

, or
`fit2boot_out_do_boot()`

.

## See also

`lm2boot_out()`

,
`fit2boot_out()`

, and
`fit2boot_out_do_boot()`

, which
implements the bootstrapping.

## Examples

```
data(data_med_mod_ab1)
dat <- data_med_mod_ab1
lm_m <- lm(m ~ x*w + c1 + c2, dat)
lm_y <- lm(y ~ m*w + x + c1 + c2, dat)
lm_out <- lm2list(lm_m, lm_y)
# In real research, R should be 2000 or even 5000
# In real research, no need to set parallel and progress to FALSE
# Parallel processing is enabled by default and
# progress is displayed by default.
lm_boot_out <- do_boot(lm_out, R = 50, seed = 1234,
parallel = FALSE,
progress = FALSE)
wlevels <- mod_levels(w = "w", fit = lm_out)
wlevels
#> w
#> M+1.0SD 6.046455
#> Mean 4.990179
#> M-1.0SD 3.933902
out <- cond_indirect_effects(wlevels = wlevels,
x = "x",
y = "y",
m = "m",
fit = lm_out,
boot_ci = TRUE,
boot_out = lm_boot_out)
out
#>
#> == Conditional indirect effects ==
#>
#> Path: x -> m -> y
#> Conditional on moderator(s): w
#> Moderator(s) represented by: w
#>
#> [w] (w) ind CI.lo CI.hi Sig m~x y~m
#> 1 M+1.0SD 6.046 0.248 0.029 0.452 Sig 0.342 0.725
#> 2 Mean 4.990 0.024 -0.084 0.219 0.063 0.375
#> 3 M-1.0SD 3.934 -0.006 -0.066 0.108 -0.216 0.026
#>
#> - [CI.lo to CI.hi] are 95.0% percentile confidence intervals by
#> nonparametric bootstrapping with 50 samples.
#> - The 'ind' column shows the indirect effects.
#> - ‘m~x’,‘y~m’ is/are the path coefficient(s) along the path conditional
#> on the moderator(s).
#>
```